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1

Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Peng, Guangdun, Suo, Shengbao, Cui, Guizhong, Yu, Fang, Wang, Ran, Chen, Jun, Chen, Shirui, Liu, Zhiwen, Chen, Guoyu, Qian, Yun, Tam, Patrick P. L., Han, Jing-Dong J., Jing, Naihe

Journal:

Year:

2019

Language:

english

File:

PDF, 17.89 MB

english, 2019

2

Dynamic Heterogeneity of Brachyury in Mouse Epiblast Stem Cells Mediates Distinct Respond to Extrinsic BMP Signaling

Song, Lu, Chen, Jun, Peng, Guangdun, Tang, Ke, Jing, Naihe

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 8.60 MB

english, 2016

3

Suppressing Nodal Signaling Activity Predisposes Ectodermal Differentiation of Epiblast Stem Cells

Liu, Chang, Wang, Ran, He, Zhisong, Osteil, Pierre, Wilkie, Emilie, Yang, Xianfa, Chen, Jun, Cui, Guizhong, Guo, Wenke, Chen, Yingying, Peng, Guangdun, Tam, Patrick P.L., Jing, Naihe

Journal:

Stem Cell Reports

Year:

2018

Language:

english

File:

PDF, 4.48 MB

english, 2018

4

Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Peng, Guangdun, Suo, Shengbao, Cui, Guizhong, Yu, Fang, Wang, Ran, Chen, Jun, Chen, Shirui, Liu, Zhiwen, Chen, Guoyu, Qian, Yun, Tam, Patrick P. L., Han, Jing-Dong J., Jing, Naihe

Journal:

Year:

2020

File:

PDF, 546 KB

2020

5

Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo

Peng, Guangdun, Suo, Shengbao, Chen, Jun, Chen, Weiyang, Liu, Chang, Yu, Fang, Wang, Ran, Chen, Shirui, Sun, Na, Cui, Guizhong, Song, Lu, Tam, Patrick P.L., Han, Jing-Dong J., Jing, Naihe

Journal:

Developmental Cell

Year:

2016

Language:

english

File:

PDF, 3.59 MB

english, 2016

6

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation

Friedman, Clayton E., Nguyen, Quan, Lukowski, Samuel W., Helfer, Abbigail, Chiu, Han Sheng, Miklas, Jason, Levy, Shiri, Suo, Shengbao, Han, Jing-Dong Jackie, Osteil, Pierre, Peng, Guangdun, Jing, Naih

Journal:

Year:

2018

Language:

english

File:

PDF, 5.50 MB

english, 2018

7

Dynamics of Wnt activity on the acquisition of ectoderm potency in epiblast stem cells

Osteil, Pierre, Studdert, Josh B., Goh, Hwee Ngee, Wilkie, Emilie E., Fan, Xiaochen, Khoo, Poh-Lynn, Peng, Guangdun, Salehin, Nazmus, Knowles, Hilary, Han, Jing-Dong J., Jing, Naihe, Fossat, Nicolas,

Journal:

Development (The Company of Biologists)

Year:

2019

Language:

english

File:

PDF, 4.97 MB

english, 2019

8

CRISPR-Cas9-mediated genome editing in one blastomere of two-cell embryos reveals a novel Tet3 function in regulating neocortical development

Wang, Lingbo, Li, Min-Yin, Qu, Chao, Miao, Wan-Ying, Yin, Qi, Liao, Jiaoyang, Cao, Hua-Teng, Huang, Min, Wang, Kai, Zuo, Erwei, Peng, Guangdun, Zhang, Shu-Xin, Chen, Guodong, Li, Qing, Tang, Ke, Yu, Q

Journal:

Year:

2017

Language:

english

File:

PDF, 12.05 MB

english, 2017

9

Silencing of developmental genes by H3K27me3 and DNA methylation reflects the discrepant plasticity of embryonic and extraembryonic lineages

Yang, Xianfa, Hu, Boqiang, Hou, Yu, Qiao, Yunbo, Wang, Ran, Chen, Yingying, Qian, Yun, Feng, Su, Chen, Jun, Liu, Chang, Peng, Guangdun, Tang, Fuchou, Jing, Naihe

Journal:

Year:

2018

Language:

english

File:

PDF, 1.51 MB

english, 2018

10

Nkx2.5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta

Zamir, Lyad, Singh, Reena, Nathan, Elisha, Patrick, Ralph, Yifa, Oren, Yahalom-Ronen, Yfat, Arraf, Alaa A, Schultheiss, Thomas M, Suo, Shengbao, Han, Jing-Dong Jackie, Peng, Guangdun, Jing, Naihe, Wan

Journal:

Year:

2017

Language:

english

File:

PDF, 17.64 MB

english, 2017

11

Distinct enhancer signatures in the mouse gastrula delineate progressive cell fate continuum during embryo development

Yang, Xianfa, Hu, Boqiang, Liao, Jiaoyang, Qiao, Yunbo, Chen, Yingying, Qian, Yun, Feng, Su, Yu, Fang, Dong, Ji, Hou, Yu, Xu, He, Wang, Ran, Peng, Guangdun, Li, Jinsong, Tang, Fuchou, Jing, Naihe

Journal:

Year:

2019

Language:

english

File:

PDF, 6.85 MB

english, 2019

12

C-KIT Expression Distinguishes Fetal from Postnatal Skeletal Progenitors

He, Di Demi, Tang, Xinyu Thomas, Dong, Wenjie, Cui, Guizhong, Peng, Guangdun, Yin, Xiujuan, Chen, Yujie, Jing, Naihe, Zhou, Bo O.

Journal:

Stem Cell Reports

Year:

2020

File:

PDF, 6.58 MB

2020

13

Genome-wide analysis of histone acetylation dynamics during mouse embryonic stem cell neural differentiation

Liu, Pingyu, Dou, Xiaoyang, Peng, Guangdun, Han, Jing-Dong Jackie, Jing, Naihe

Journal:

Year:

2015

Language:

english

File:

PDF, 209 KB

english, 2015

14

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning

Kim, Hani Jieun, Osteil, Pierre, Humphrey, Sean J, Cinghu, Senthilkumar, Oldfield, Andrew J, Patrick, Ellis, Wilkie, Emilie E, Peng, Guangdun, Suo, Shengbao, Jothi, Raja, Tam, Patrick P L, Yang, Pengy

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 6.36 MB

english, 2019

15

Corrigendum to “Role of SIP30 in the development and maintenance of peripheral nerve injury-induced neuropathic pain” [Pain 146 (2009) 130–140]

Yu-Qiu Zhang, Ning Guo, Guangdun Peng, Xidao Wang, Mei Han, Jeremy Raincrow, Chi-hua Chiu, Lique M. Coolen, Robert J. Wenthold, Zhi-Qi Zhao, Naihe Jing, Lei Yu

Journal:

Year:

2010

Language:

english

File:

PDF, 65 KB

english, 2010

16

Author Correction: Hormones induce the formation of luminal-derived basal cells in the mammary gland

Song, Wenqian, Wang, Ran, Jiang, Weimin, Yin, Qi, Peng, Guangdun, Yang, Ruikai, Yu, Qing Cissy, Chen, Jianfeng, Li, Jingsong, Cheung, Tom H., Jing, Naihe, Zeng, Yi Arial

Journal:

Year:

2019

Language:

english

File:

PDF, 298 KB

english, 2019

17

Histone deacetylation promotes mouse neural induction by restricting Nodal-dependent mesendoderm fate

Liu, Pingyu, Dou, Xiaoyang, Liu, Chang, Wang, Lingbo, Xing, Can, Peng, Guangdun, Chen, Jun, Yu, Fang, Qiao, Yunbo, Song, Lu, Wu, Yuxuan, Yue, Chunmei, Li, Jinsong, Han, Jing-Dong J., Tang, Ke, Jing, N

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 4.31 MB

english, 2015

18

Transcriptome analysis reveals determinant stages controlling human embryonic stem cell commitment to neuronal cells

Li, Yuanyuan, Wang, Ran, Qiao, Nan, Peng, Guangdun, Zhang, Ke, Tang, Ke, Han, Jing-dong J, Jing, Naihe

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 11.22 MB

english, 2017

19

Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development

Cheng, Shangli, Pei, Yu, He, Liqun, Peng, Guangdun, Reinius, Björn, Tam, Patrick P.L., Jing, Naihe, Deng, Qiaolin

Journal:

Year:

2019

File:

PDF, 7.05 MB

2019

20

The genome-wide molecular regulation of mouse gastrulation embryo

Peng, Guangdun, Jing, Naihe

Journal:

SCIENCE CHINA Life Sciences

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

21

The transcription factor Pou3f1 promotes neural fate commitment via activation of neural lineage genes and inhibition of external signaling pathways

Zhu, Qingqing, Song, Lu, Peng, Guangdun, Sun, Na, Chen, Jun, Zhang, Ting, Sheng, Nengyin, Tang, Wei, Qian, Cheng, Qiao, Yunbo, Tang, Ke, Han, Jing-Dong Jackie, Li, Jinsong, Jing, Naihe

Journal:

Year:

2014

Language:

english

File:

PDF, 6.43 MB

english, 2014

22

A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis

Xue, Yuanyuan, Liu, Denghui, Cui, Guizhong, Ding, Yanyan, Ai, Daosheng, Gao, Suwei, Zhang, Yifan, Suo, Shengbao, Wang, Xiaohan, Lv, Peng, Zhou, Chunyu, Li, Yizhou, Chen, Xingwei, Peng, Guangdun, Jing,

Journal:

Year:

2019

File:

PDF, 5.31 MB

2019

23

Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Peng, Guangdun, Suo, Shengbao, Cui, Guizhong, Yu, Fang, Wang, Ran, Chen, Jun, Chen, Shirui, Liu, Zhiwen, Chen, Guoyu, Qian, Yun, Tam, Patrick P. L., Han, Jing-Dong J., Jing, Naihe

Journal:

Year:

2020

File:

PDF, 572 KB

2020

24

Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning

Kim, Hani Jieun, Osteil, Pierre, Humphrey, Sean J, Cinghu, Senthilkumar, Oldfield, Andrew J, Patrick, Ellis, Wilkie, Emilie E, Peng, Guangdun, Suo, Shengbao, Jothi, Raja, Tam, Patrick P L, Yang, Pengy

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 6.36 MB

2019

25

Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq

Chen, Jun, Suo, Shengbao, Tam, Patrick PL, Han, Jing-Dong J, Peng, Guangdun, Jing, Naihe

Journal:

Nature Protocols

Year:

2017

Language:

english

File:

PDF, 2.90 MB

english, 2017

26

Role of SIP30 in the development and maintenance of peripheral nerve injury-induced neuropathic pain

Yu-Qiu Zhang, Ning Guo, Guangdun Peng, Mei Han, Jeremy Raincrow, Chi-hua Chiu, Lique M. Coolen, Robert J. Wenthold, Zhi-Qi Zhao, Naihe Jing, Lei Yu

Journal:

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

27

A gene regulatory network anchored by LIM homeobox 1 (LHX1) for embryonic head development

Sibbritt, Tennille, Ip, Chi K., Khoo, Poh-Lynn, Wilkie, Emilie, Jones, Vanessa, Sun, Jane Q. J., Shen, Joanne X., Peng, Guangdun, Han, Jing-Dong J., Jing, Naihe, Osteil, Pierre, Ramialison, Mirana, Ta

Journal:

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

28

A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis

Xue, Yuanyuan, Liu, Denghui, Cui, Guizhong, Ding, Yanyan, Ai, Daosheng, Gao, Suwei, Zhang, Yifan, Suo, Shengbao, Wang, Xiaohan, Lv, Peng, Zhou, Chunyu, Li, Yizhou, Chen, Xingwei, Peng, Guangdun, Jing,

Journal:

Year:

2019

Language:

english

File:

PDF, 5.31 MB

english, 2019

29

Intrinsic regulations in neural fate commitment

Tang, Ke, Peng, Guangdun, Qiao, Yunbo, Song, Lu, Jing, Naihe

Journal:

Development, Growth & Differentiation

Year:

2015

Language:

english

File:

PDF, 273 KB

english, 2015

30

Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development

Han, Xue, Luo, Sai, Peng, Guangdun, Lu, J Yuyang, Cui, Guizhong, Liu, Lichao, Yan, Pixi, Yin, Yafei, Liu, Wei, Wang, Ran, Chang, Zai, Na, Jie, Jing, Naihe, Shen, Xiaohua

Journal:

Journal of Molecular Cell Biology

Year:

2018

Language:

english

File:

PDF, 615 KB

english, 2018

31

Conserved Epigenetic Regulatory Logic Infers Genes Governing Cell Identity

Shim, Woo Jun, Sinniah, Enakshi, Xu, Jun, Vitrinel, Burcu, Alexanian, Michael, Andreoletti, Gaia, Shen, Sophie, Sun, Yuliangzi, Balderson, Brad, Boix, Carles, Peng, Guangdun, Jing, Naihe, Wang, Yulian

Journal:

Year:

2020

File:

PDF, 6.21 MB

2020

32

Genome-wide ChIP-seq and RNA-seq analyses of Pou3f1 during mouse pluripotent stem cell neural fate commitment

Song, Lu, Sun, Na, Peng, Guangdun, Chen, Jun, Han, Jing-Dong Jackie, Jing, Naihe

Journal:

Year:

2015

Language:

english

File:

PDF, 418 KB

english, 2015

33

VGLL4 plays a critical role in heart valve development and homeostasis

Yu, Wei, Ma, Xueyan, Xu, Jinjin, Heumüller, Andreas Wilhelm, Fei, Zhaoliang, Feng, Xue, Wang, Xiaodong, Liu, Kuo, Li, Jinhui, Cui, Guizhong, Peng, Guangdun, Ji, Hongbin, Li, Jinsong, Jing, Naihe, Song

Journal:

Year:

2019

File:

PDF, 15.41 MB

2019

34

Using Single-Cell and Spatial Transcriptomes to Understand Stem Cell Lineage Specification During Early Embryo Development

Peng, Guangdun, Cui, Guizhong, Ke, Jincan, Jing, Naihe

Journal:

Annual Review of Genomics and Human Genetics

Year:

2020

File:

PDF, 946 KB

2020

35

Lineage specification of early embryos and embryonic stem cells at the dawn of enabling technologies

Peng, Guangdun, Tam, Patrick P.L., Jing, Naihe

Journal:

National Science Review

Year:

2017

Language:

english

File:

PDF, 382 KB

english, 2017

36

TGF-β signaling pathway in early mouse development and embryonic stem cells

Liu, Chang, Peng, Guangdun, Jing, Naihe

Journal:

Acta Biochimica et Biophysica Sinica

Year:

2017

Language:

english

File:

PDF, 297 KB

english, 2017

37

Expression of the IgSF protein Kirre in the rat central nervous system

Lingwei Kong, Roy C.Y. Choi, Heidi Q. Xie, Xidao Wang, Guangdun Peng, Zhiqin Xie, Karl W.K. Tsim, Naihe Jing

Journal:

Year:

2011

Language:

english

File:

PDF, 1.84 MB

english, 2011

38

Author Correction: Sequential formation and resolution of multiple rosettes drive embryo remodelling after implantation

Christodoulou, Neophytos, Kyprianou, Christos, Weberling, Antonia, Wang, Ran, Cui, Guizhong, Peng, Guangdun, Jing, Naihe, Zernicka-Goetz, Magdalena

Journal:

Nature Cell Biology

Year:

2018

File:

PDF, 495 KB

2018

39

Regulatory network characterization in development: challenges and opportunities

Peng, Guangdun, Han, Jing-Dong J.

Journal:

Year:

2018

File:

PDF, 1.01 MB

2018

40

Comments on ‘Molecular architecture of lineage allocation and tissue organization in early mouse embryo’

Cui, Guizhong, Jing, Naihe, Peng, Guangdun

Journal:

Journal of Molecular Cell Biology

Year:

2019

Language:

english

File:

PDF, 887 KB

english, 2019

41

Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo

Peng, Guangdun, Suo, Shengbao, Cui, Guizhong, Yu, Fang, Wang, Ran, Chen, Jun, Chen, Shirui, Liu, Zhiwen, Chen, Guoyu, Qian, Yun, Tam, Patrick P. L., Han, Jing-Dong J., Jing, Naihe

Journal:

Year:

2020

File:

PDF, 546 KB

2020

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